Requirements
	- JRE 1.6 or greater
	- Main memory 2GB or greater (recommended 4GB)

Installation
	- Unzip MSGFPlus.zip
	- Place MSGFPlus.jar in any folder

Usage Information
	- Type 'java -jar MSGFPlus.jar' for command line arguments
	- To convert an mzid output file into a tsv file, run 'java -cp MSGFPlus.jar edu.ucsd.msjava.ui.MzIDToTsv'
	- For detailed documentation, see the "doc" subfolder, or visit:
		- https://omics.pnl.gov/software/ms-gf
		- https://bix-lab.ucsd.edu/pages/viewpage.action?pageId=13533355

Contact Information
	- PNNL Proteomics [proteomics@pnnl.gov]
    - Sangtae Kim [sangtae.kim (at) gmail.com]
Publications
	- MS-GF+: Universal Database Search Tool for Mass Spectrometry, Sangtae Kim, Pavel A. Pevzner, 
      Nat Commun. 2014 Oct 31;5:5277. doi: 10.1038/ncomms6277.
	  http://www.ncbi.nlm.nih.gov/pubmed/?term=25358478

	- Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases, Sangtae Kim, Nitin Gupta and Pavel Pevzner,
      J Proteome Res. 2008 Aug;7(8):3354-63. doi: 10.1021/pr8001244.
	  http://www.ncbi.nlm.nih.gov/pubmed/?term=18597511

Updates
	- http://omics.pnl.gov/software/ms-gf

Source
	- https://github.com/sangtaekim/msgfplus