Requirements - JRE 1.6 or greater - Main memory 2GB or greater (recommended 4GB) Installation - Place luciphor2.jar in any folder Usage Information - Type 'java -jar luciphor2.jar' for command line arguments - For detailed documentation, visit http://luciphor2.sourceforge.net/ Contact Information - If you are having problems with the software, please submit a post to the support forum or email at: luciphor-support@googlegroups.com Publications - LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach (doi: 10.1074/mcp.M113.028928) - LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data. (doi: 10.1093/bioinformatics/btu788)