input file ('traML') [traML]Tab separated file containing the SWATH windows for exclusion of fragment ions falling into the precursor isolation window: lower_offset upper_offset \newline 400 425 \newline ... Note that the first line is a header and will be skipped. [txt,opt.]output file [traML]The text sent to standard out during the execution of OpenSwathAssayGenerator.The text sent to standard error during the execution of OpenSwathAssayGenerator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)