Input file [mzML,featureXML,consensusXML]Input file containing consensus features whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'consensus:blackorwhitelist:rt' and 'consensus:blackorwhitelist:mz' options.#br#If consensus:blackorwhitelist:maps is specified, only these will be used.#br# [consensusXML,opt.]Input file containing MS2 identifications whose corresponding MS2 spectra should be removed from the mzML file!#br#Matching tolerances are taken from 'id:rt' and 'id:mz' options.#br#This tool will require all IDs to be matched to an MS2 spectrum, and quit with error otherwise. Use 'id:blacklist_imperfect' to allow for mismatches. [idXML,opt.]Output file [mzML,featureXML,consensusXML]The text sent to standard out during the execution of FileFilter.The text sent to standard error during the execution of FileFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)