Class
CompressedSA
A suffix array storing only a few suffix array entries and computing the remaining on demand.
CompressedSA<TSparseString, TLfTable, TSpec>
Include Headers
seqan/index.h
Parameters
TSparseString
The string containing specific suffix array entries.
TLfTable
The lfTable containg an occurrence table and a prefix sum table.
Types: LfTable
TSpec
Possibility to specialise a compressed suffix array.
Default: void.
Remarks
The compressed suffix array can only be used with the FM index.
Functions
assignValueAssigns value to item.
clearResets an object.
emptyTest a container for being empty.
getFibreReturns a specific fibre of a container.
lengthThe number of items/characters.
openOpens a file.
save 
setLfTableSet the LfTable of the compressed suffix array..
valueReference to the value.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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