A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2017-12-21, 16:04 based on data in:
/group/ag_abi/kneubert/brucella_assembly_fields/multiQC_e1h2/multiQC_1/QUAST_final
/group/ag_abi/kneubert/brucella_assembly_fields/multiQC_e1h2/multiQC_1/qualimap
/group/ag_abi/kneubert/brucella_assembly_fields/multiQC_e1h2/multiQC_1/Prokka_scaffolds
General Statistics
Showing 200/200 rows and 10/17 columns.Sample Name | Avg. GC | Insert Size | ≥ 30X | Coverage | % Aligned | N50 (Kbp) | Length (Mbp) | Organism | Contigs | CDS |
---|---|---|---|---|---|---|---|---|---|---|
16-BR00583 | 57% | 404bp | 99.8% | 118.0X | 99.4% | 2133.6bp | 3.4bp | Genus species | 12.0 | 3167 |
16-BR00583_broken | 427.0bp | 3.3bp | ||||||||
16-BR00585 | 57% | 420bp | 96.0% | 49.0X | 99.5% | 2154.5bp | 3.4bp | Genus species | 3.0 | 3169 |
16-BR00585_broken | 191.9bp | 3.3bp | ||||||||
16-BR00586 | 57% | 409bp | 99.8% | 137.0X | 99.7% | 2243.1bp | 3.3bp | Genus species | 5.0 | 3151 |
16-BR00586_broken | 377.1bp | 3.3bp | ||||||||
16-BR00587 | 57% | 441bp | 99.6% | 113.0X | 99.7% | 2182.3bp | 3.4bp | Genus species | 4.0 | 3200 |
16-BR00587_broken | 444.5bp | 3.3bp | ||||||||
16-BR00588 | 57% | 412bp | 99.8% | 112.0X | 99.6% | 2239.4bp | 3.3bp | Genus species | 6.0 | 3152 |
16-BR00588_broken | 423.5bp | 3.3bp | ||||||||
16-BR00598 | 57% | 394bp | 99.8% | 153.0X | 99.7% | 2167.4bp | 3.4bp | Genus species | 5.0 | 3181 |
16-BR00598_broken | 533.1bp | 3.3bp | ||||||||
16-BR00603 | 57% | 401bp | 99.8% | 133.0X | 99.7% | 2241.0bp | 3.3bp | Genus species | 6.0 | 3163 |
16-BR00603_broken | 424.1bp | 3.3bp | ||||||||
16-BR00605 | 57% | 388bp | 99.9% | 132.0X | 99.7% | 2239.0bp | 3.3bp | Genus species | 4.0 | 3152 |
16-BR00605_broken | 674.6bp | 3.3bp | ||||||||
16-BR00623 | 57% | 402bp | 99.8% | 125.0X | 99.6% | 2241.6bp | 3.3bp | Genus species | 4.0 | 3164 |
16-BR00623_broken | 356.1bp | 3.3bp | ||||||||
16-BR00624 | 57% | 448bp | 99.7% | 100.0X | 99.6% | 2133.8bp | 3.4bp | Genus species | 5.0 | 3173 |
16-BR00624_broken | 427.0bp | 3.3bp | ||||||||
16-BR00626 | 57% | 513bp | 98.9% | 64.0X | 99.5% | 2197.5bp | 3.4bp | Genus species | 4.0 | 3183 |
16-BR00626_broken | 457.6bp | 3.3bp | ||||||||
16-BR00631 | 57% | 477bp | 99.3% | 78.0X | 99.5% | 2099.5bp | 3.3bp | Genus species | 6.0 | 3157 |
16-BR00631_broken | 457.6bp | 3.3bp | ||||||||
16-BR00632 | 57% | 483bp | 99.6% | 90.0X | 99.5% | 2237.9bp | 3.3bp | Genus species | 3.0 | 3165 |
16-BR00632_broken | 465.8bp | 3.3bp | ||||||||
16-BR00638 | 57% | 458bp | 99.8% | 107.0X | 99.5% | 2198.7bp | 3.4bp | Genus species | 6.0 | 3196 |
16-BR00638_broken | 457.7bp | 3.3bp | ||||||||
16-BR00645 | 57% | 436bp | 99.7% | 106.0X | 99.5% | 2237.3bp | 3.3bp | Genus species | 7.0 | 3159 |
16-BR00645_broken | 427.1bp | 3.3bp | ||||||||
16-BR00647 | 57% | 420bp | 99.8% | 132.0X | 99.7% | 2111.0bp | 3.3bp | Genus species | 6.0 | 3140 |
16-BR00647_broken | 224.1bp | 3.3bp | ||||||||
16-BR00648 | 57% | 356bp | 100.0% | 212.0X | 99.8% | 2241.4bp | 3.3bp | Genus species | 4.0 | 3158 |
16-BR00648_broken | 356.0bp | 3.3bp | ||||||||
16-BR00649 | 57% | 394bp | 99.8% | 106.0X | 99.7% | 2234.9bp | 3.3bp | Genus species | 4.0 | 3151 |
16-BR00649_broken | 319.8bp | 3.3bp | ||||||||
16-BR00650 | 57% | 370bp | 99.9% | 127.0X | 99.7% | 2095.3bp | 3.3bp | Genus species | 6.0 | 3152 |
16-BR00650_broken | 377.3bp | 3.3bp | ||||||||
16-BR00651 | 57% | 409bp | 99.8% | 107.0X | 99.7% | 2098.4bp | 3.3bp | Genus species | 3.0 | 3167 |
16-BR00651_broken | 533.2bp | 3.3bp | ||||||||
16-BR00652 | 57% | 387bp | 99.8% | 149.0X | 99.7% | 2196.7bp | 3.4bp | Genus species | 4.0 | 3165 |
16-BR00652_broken | 184.5bp | 3.3bp | ||||||||
16-BR00653 | 57% | 404bp | 99.8% | 126.0X | 99.7% | 2239.2bp | 3.3bp | Genus species | 5.0 | 3158 |
16-BR00653_broken | 309.8bp | 3.3bp | ||||||||
16-BR00654 | 57% | 375bp | 99.9% | 141.0X | 99.7% | 2232.9bp | 3.3bp | Genus species | 4.0 | 3153 |
16-BR00654_broken | 425.6bp | 3.3bp | ||||||||
16-BR00655 | 57% | 405bp | 99.9% | 132.0X | 99.7% | 2237.9bp | 3.3bp | Genus species | 5.0 | 3167 |
16-BR00655_broken | 363.9bp | 3.3bp | ||||||||
16-BR00656 | 57% | 373bp | 99.9% | 156.0X | 99.7% | 2094.3bp | 3.3bp | Genus species | 5.0 | 3154 |
16-BR00656_broken | 377.3bp | 3.3bp | ||||||||
16-BR00657 | 57% | 428bp | 99.8% | 106.0X | 99.7% | 2196.8bp | 3.4bp | Genus species | 6.0 | 3188 |
16-BR00657_broken | 448.0bp | 3.3bp | ||||||||
16-BR00658 | 57% | 369bp | 99.9% | 128.0X | 99.5% | 2200.1bp | 3.4bp | Genus species | 4.0 | 3191 |
16-BR00658_broken | 395.3bp | 3.3bp | ||||||||
16-BR00659 | 57% | 392bp | 99.8% | 135.0X | 99.7% | 2133.4bp | 3.4bp | Genus species | 5.0 | 3166 |
16-BR00659_broken | 513.0bp | 3.3bp | ||||||||
16-BR00660 | 57% | 390bp | 99.8% | 134.0X | 99.7% | 2118.5bp | 3.3bp | Genus species | 5.0 | 3172 |
16-BR00660_broken | 377.6bp | 3.3bp | ||||||||
16-BR00661 | 57% | 365bp | 99.9% | 163.0X | 99.7% | 2240.5bp | 3.3bp | Genus species | 5.0 | 3156 |
16-BR00661_broken | 465.9bp | 3.3bp | ||||||||
16-BR00662 | 57% | 380bp | 99.8% | 129.0X | 99.7% | 2237.8bp | 3.3bp | Genus species | 8.0 | 3151 |
16-BR00662_broken | 317.8bp | 3.3bp | ||||||||
17-BR00001 | 58% | 449bp | 98.9% | 65.0X | 99.6% | 2181.1bp | 3.3bp | Genus species | 8.0 | 3104 |
17-BR00001_broken | 377.0bp | 3.3bp | ||||||||
17-BR00002 | 57% | 328bp | 100.0% | 144.0X | 99.8% | 2379.1bp | 3.4bp | Genus species | 6.0 | 3124 |
17-BR00002_broken | 462.7bp | 3.3bp | ||||||||
17-BR00003 | 58% | 323bp | 31.7% | 26.0X | 99.7% | 2197.1bp | 3.3bp | Genus species | 11.0 | 3093 |
17-BR00003_broken | 227.7bp | 3.3bp | ||||||||
17-BR00004 | 58% | 313bp | 29.0% | 25.0X | 99.8% | 2179.5bp | 3.4bp | Genus species | 27.0 | 3134 |
17-BR00004_broken | 133.4bp | 3.3bp | ||||||||
17-BR00005 | 58% | 296bp | 99.4% | 67.0X | 99.8% | 2551.5bp | 3.3bp | Genus species | 17.0 | 3113 |
17-BR00005_broken | 371.5bp | 3.3bp | ||||||||
17-BR00006 | 58% | 390bp | 99.6% | 79.0X | 99.7% | 2173.8bp | 3.3bp | Genus species | 8.0 | 3108 |
17-BR00006_broken | 390.8bp | 3.3bp | ||||||||
17-BR00007 | 58% | 428bp | 99.2% | 76.0X | 99.6% | 2171.8bp | 3.2bp | Genus species | 2.0 | 2921 |
17-BR00007_broken | 251.3bp | 3.1bp | ||||||||
17-BR00008 | 58% | 411bp | 82.1% | 38.0X | 99.7% | 2565.7bp | 3.3bp | Genus species | 10.0 | 3106 |
17-BR00008_broken | 377.2bp | 3.3bp | ||||||||
17-BR00009 | 58% | 442bp | 80.1% | 36.0X | 99.7% | 2347.0bp | 3.3bp | Genus species | 4.0 | 3105 |
17-BR00009_broken | 456.7bp | 3.3bp | ||||||||
17-BR00010 | 58% | 378bp | 99.8% | 86.0X | 99.8% | 2379.8bp | 3.4bp | Genus species | 7.0 | 3142 |
17-BR00010_broken | 463.8bp | 3.3bp | ||||||||
17-BR00011 | 58% | 420bp | 99.3% | 82.0X | 99.4% | 2650.5bp | 3.4bp | Genus species | 10.0 | 3149 |
17-BR00011_broken | 431.7bp | 3.3bp | ||||||||
17-BR00012 | 58% | 453bp | 99.0% | 69.0X | 99.6% | 2362.5bp | 3.4bp | Genus species | 4.0 | 3154 |
17-BR00012_broken | 357.1bp | 3.3bp | ||||||||
17-BR00013 | 58% | 419bp | 98.8% | 56.0X | 99.7% | 2347.3bp | 3.3bp | Genus species | 6.0 | 3112 |
17-BR00013_broken | 456.7bp | 3.3bp | ||||||||
17-BR00014 | 58% | 382bp | 99.8% | 114.0X | 99.7% | 2349.0bp | 3.3bp | Genus species | 5.0 | 3111 |
17-BR00014_broken | 443.7bp | 3.3bp | ||||||||
17-BR00015 | 57% | 398bp | 99.7% | 91.0X | 99.8% | 2349.9bp | 3.3bp | Genus species | 4.0 | 3112 |
17-BR00015_broken | 390.8bp | 3.3bp | ||||||||
17-BR00016 | 58% | 365bp | 99.9% | 116.0X | 99.7% | 2348.7bp | 3.3bp | Genus species | 6.0 | 3110 |
17-BR00016_broken | 302.3bp | 3.3bp | ||||||||
17-BR00017 | 57% | 412bp | 97.5% | 52.0X | 99.7% | 2334.1bp | 3.3bp | Genus species | 3.0 | 3101 |
17-BR00017_broken | 580.6bp | 3.3bp | ||||||||
17-BR00018 | 58% | 478bp | 99.0% | 66.0X | 99.4% | 2348.4bp | 3.3bp | Genus species | 4.0 | 3106 |
17-BR00018_broken | 437.4bp | 3.3bp | ||||||||
17-BR00019 | 57% | 389bp | 99.7% | 82.0X | 99.8% | 2455.0bp | 3.4bp | Genus species | 5.0 | 3154 |
17-BR00019_broken | 569.0bp | 3.3bp | ||||||||
17-BR00020 | 57% | 348bp | 99.9% | 138.0X | 99.7% | 2347.9bp | 3.3bp | Genus species | 4.0 | 3108 |
17-BR00020_broken | 580.4bp | 3.3bp | ||||||||
17-BR00021 | 57% | 364bp | 99.8% | 107.0X | 99.8% | 2454.0bp | 3.4bp | Genus species | 5.0 | 3153 |
17-BR00021_broken | 568.9bp | 3.3bp | ||||||||
17-BR00022 | 57% | 375bp | 99.9% | 142.0X | 99.7% | 2277.4bp | 3.4bp | Genus species | 5.0 | 3142 |
17-BR00022_broken | 460.1bp | 3.3bp | ||||||||
17-BR00023 | 57% | 378bp | 99.9% | 135.0X | 99.7% | 2350.3bp | 3.3bp | Genus species | 6.0 | 3112 |
17-BR00023_broken | 473.2bp | 3.3bp | ||||||||
17-BR00024 | 57% | 432bp | 99.6% | 83.0X | 99.6% | 2330.0bp | 3.5bp | Genus species | 7.0 | 3175 |
17-BR00024_broken | 470.9bp | 3.3bp | ||||||||
17-BR00271 | 58% | 374bp | 99.9% | 127.0X | 99.7% | 2458.8bp | 3.3bp | Genus species | 4.0 | 3150 |
17-BR00271_broken | 599.3bp | 3.3bp | ||||||||
17-BR00273 | 57% | 394bp | 99.2% | 95.0X | 99.7% | 2370.7bp | 3.4bp | Genus species | 6.0 | 3187 |
17-BR00273_broken | 281.5bp | 3.4bp | ||||||||
17-BR00274 | 58% | 427bp | 98.9% | 103.0X | 99.4% | 2187.4bp | 3.4bp | Genus species | 15.0 | 3132 |
17-BR00274_broken | 261.9bp | 3.3bp | ||||||||
17-BR00275 | 57% | 373bp | 99.1% | 146.0X | 99.4% | 2275.5bp | 3.4bp | Genus species | 12.0 | 3127 |
17-BR00275_broken | 253.2bp | 3.3bp | ||||||||
17-BR00276 | 58% | 404bp | 99.0% | 108.0X | 99.4% | 2235.9bp | 3.4bp | Genus species | 12.0 | 3128 |
17-BR00276_broken | 259.6bp | 3.3bp | ||||||||
17-BR00277 | 58% | 341bp | 99.2% | 195.0X | 99.5% | 2279.0bp | 3.4bp | Genus species | 17.0 | 3137 |
17-BR00277_broken | 219.0bp | 3.3bp | ||||||||
17-BR00278 | 58% | 400bp | 99.1% | 144.0X | 99.4% | 2238.5bp | 3.3bp | Genus species | 8.0 | 3120 |
17-BR00278_broken | 196.2bp | 3.3bp | ||||||||
17-BR00279 | 58% | 401bp | 99.2% | 91.0X | 99.6% | 2394.8bp | 3.4bp | Genus species | 5.0 | 3187 |
17-BR00279_broken | 317.8bp | 3.4bp | ||||||||
17-BR00280 | 58% | 381bp | 99.3% | 117.0X | 99.6% | 2369.9bp | 3.4bp | Genus species | 11.0 | 3169 |
17-BR00280_broken | 307.6bp | 3.4bp | ||||||||
17-BR00281 | 58% | 392bp | 83.4% | 40.0X | 97.9% | 2318.7bp | 3.4bp | Genus species | 14.0 | 3176 |
17-BR00281_broken | 128.7bp | 3.3bp | ||||||||
17-BR00282 | 58% | 385bp | 98.9% | 72.0X | 98.0% | 2130.0bp | 3.3bp | Genus species | 10.0 | 3177 |
17-BR00282_broken | 155.9bp | 3.3bp | ||||||||
17-BR00283 | 58% | 353bp | 99.8% | 121.0X | 99.5% | 2451.2bp | 3.3bp | Genus species | 4.0 | 3139 |
17-BR00283_broken | 532.0bp | 3.3bp | ||||||||
17-BR00284 | 58% | 375bp | 99.5% | 88.0X | 99.7% | 2131.1bp | 3.2bp | Genus species | 3.0 | 3008 |
17-BR00284_broken | 359.5bp | 3.1bp | ||||||||
17-BR00285 | 58% | 418bp | 99.2% | 74.0X | 99.6% | 2354.4bp | 3.4bp | Genus species | 5.0 | 3154 |
17-BR00285_broken | 291.7bp | 3.3bp | ||||||||
17-BR00286 | 57% | 433bp | 24.3% | 24.0X | 99.5% | 2133.0bp | 3.2bp | Genus species | 2.0 | 2997 |
17-BR00286_broken | 251.7bp | 3.1bp | ||||||||
17-BR00287 | 58% | 428bp | 99.4% | 71.0X | 99.3% | 2130.6bp | 3.2bp | Genus species | 2.0 | 3014 |
17-BR00287_broken | 358.8bp | 3.1bp | ||||||||
17-BR00288 | 57% | 402bp | 99.3% | 70.0X | 99.7% | 2129.3bp | 3.2bp | Genus species | 3.0 | 3004 |
17-BR00288_broken | 358.6bp | 3.1bp | ||||||||
17-BR00289 | 58% | 436bp | 99.3% | 73.0X | 99.5% | 2135.7bp | 3.2bp | Genus species | 2.0 | 3016 |
17-BR00289_broken | 359.5bp | 3.1bp | ||||||||
17-BR00290 | 58% | 372bp | 99.6% | 104.0X | 99.7% | 2127.6bp | 3.2bp | Genus species | 3.0 | 3001 |
17-BR00290_broken | 360.9bp | 3.1bp | ||||||||
17-BR00291 | 57% | 367bp | 99.8% | 104.0X | 99.7% | 2133.1bp | 3.2bp | Genus species | 4.0 | 3005 |
17-BR00291_broken | 442.4bp | 3.1bp | ||||||||
17-BR00292 | 57% | 351bp | 99.8% | 135.0X | 99.7% | 2128.7bp | 3.3bp | Genus species | 5.0 | 3078 |
17-BR00292_broken | 394.0bp | 3.1bp | ||||||||
17-BR00293 | 58% | 504bp | 99.5% | 82.0X | 99.5% | 2136.4bp | 3.2bp | Genus species | 4.0 | 3014 |
17-BR00293_broken | 440.1bp | 3.1bp | ||||||||
17-BR00294 | 57% | 400bp | 99.8% | 106.0X | 99.7% | 2237.5bp | 3.3bp | Genus species | 3.0 | 3038 |
17-BR00294_broken | 359.0bp | 3.1bp | ||||||||
17-BR00295 | 57% | 393bp | 99.8% | 135.0X | 99.7% | 2126.3bp | 2.7bp | Genus species | 3.0 | 2563 |
17-BR00295_broken | 447.1bp | 2.7bp | ||||||||
17-BR00296 | 58% | 393bp | 99.7% | 107.0X | 99.7% | 2128.4bp | 3.3bp | Genus species | 3.0 | 3088 |
17-BR00296_broken | 394.3bp | 3.1bp | ||||||||
17-BR00297 | 57% | 396bp | 99.8% | 147.0X | 99.7% | 2131.1bp | 3.2bp | Genus species | 3.0 | 3022 |
17-BR00297_broken | 500.6bp | 3.1bp | ||||||||
17-BR00298 | 58% | 370bp | 99.8% | 124.0X | 99.7% | 2130.7bp | 3.3bp | Genus species | 5.0 | 3048 |
17-BR00298_broken | 454.1bp | 3.1bp | ||||||||
17-BR00299 | 57% | 412bp | 99.6% | 67.0X | 99.7% | 2480.9bp | 3.3bp | Genus species | 5.0 | 3133 |
17-BR00299_broken | 539.2bp | 3.3bp | ||||||||
17-BR00300 | 58% | 479bp | 97.4% | 53.0X | 99.2% | 2437.6bp | 3.4bp | Genus species | 8.0 | 3206 |
17-BR00300_broken | 305.9bp | 3.3bp | ||||||||
17-BR00301 | 58% | 451bp | 99.6% | 109.0X | 99.7% | 2426.5bp | 3.4bp | Genus species | 7.0 | 3199 |
17-BR00301_broken | 394.6bp | 3.3bp | ||||||||
17-BR00302 | 58% | 390bp | 99.7% | 84.0X | 99.4% | 2463.8bp | 3.3bp | Genus species | 6.0 | 3163 |
17-BR00302_broken | 367.3bp | 3.3bp | ||||||||
17-BR00303 | 58% | 365bp | 99.8% | 160.0X | 99.7% | 2373.0bp | 3.4bp | Genus species | 4.0 | 3182 |
17-BR00303_broken | 440.0bp | 3.3bp | ||||||||
17-BR00304 | 57% | 341bp | 99.6% | 110.0X | 99.6% | 2552.1bp | 3.3bp | Genus species | 7.0 | 3116 |
17-BR00304_broken | 389.8bp | 3.3bp | ||||||||
17-BR00305 | 57% | 338bp | 100.0% | 163.0X | 99.7% | 2129.2bp | 3.3bp | Genus species | 4.0 | 3152 |
17-BR00305_broken | 393.9bp | 3.3bp | ||||||||
17-BR00306 | 58% | 455bp | 99.6% | 113.0X | 99.7% | 2466.5bp | 3.4bp | Genus species | 4.0 | 3179 |
17-BR00306_broken | 223.0bp | 3.3bp | ||||||||
17-BR00307 | 57% | 357bp | 99.9% | 136.0X | 99.5% | 2557.4bp | 3.3bp | Genus species | 9.0 | 3145 |
17-BR00307_broken | 464.9bp | 3.3bp | ||||||||
17-BR00308 | 58% | 347bp | 99.9% | 245.0X | 99.7% | 2392.8bp | 3.5bp | Genus species | 40.0 | 3261 |
17-BR00308_broken | 464.4bp | 3.4bp | ||||||||
17-BR00309 | 58% | 410bp | 99.3% | 76.0X | 99.3% | 2132.7bp | 3.3bp | Genus species | 3.0 | 3151 |
17-BR00309_broken | 873.3bp | 3.3bp | ||||||||
17-BR00310 | 57% | 335bp | 99.9% | 166.0X | 99.6% | 2128.2bp | 3.3bp | Genus species | 12.0 | 3168 |
17-BR00310_broken | 462.3bp | 3.3bp | ||||||||
17-BR00311 | 57% | 441bp | 99.7% | 100.0X | 99.7% | 2468.4bp | 3.3bp | Genus species | 5.0 | 3160 |
17-BR00311_broken | 333.8bp | 3.3bp | ||||||||
17-BR00312 | 57% | 415bp | 99.7% | 87.0X | 99.3% | 2137.7bp | 3.3bp | Genus species | 5.0 | 3076 |
17-BR00312_broken | 303.5bp | 3.1bp | ||||||||
17-BR00313 | 57% | 342bp | 99.9% | 131.0X | 99.7% | 2134.2bp | 3.2bp | Genus species | 5.0 | 3019 |
17-BR00313_broken | 276.2bp | 3.1bp | ||||||||
17-BR00314 | 57% | 365bp | 98.8% | 132.0X | 98.9% | 2385.7bp | 3.4bp | Genus species | 27.0 | 3175 |
17-BR00314_broken | 125.6bp | 3.3bp | ||||||||
17-BR00315 | 57% | 400bp | 98.9% | 140.0X | 98.9% | 2387.0bp | 3.4bp | Genus species | 24.0 | 3198 |
17-BR00315_broken | 199.9bp | 3.3bp | ||||||||
17-BR00316 | 58% | 452bp | 98.6% | 91.0X | 98.9% | 2384.9bp | 3.4bp | Genus species | 19.0 | 3189 |
17-BR00316_broken | 196.1bp | 3.3bp |
QualiMap
QualiMap is a platform-independent application to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Coverage histogram
Cumulative coverage genome fraction
Insert size histogram
GC content distribution
QUAST
QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.
Assembly Statistics
Sample Name | N50 (Kbp) | N75 (Kbp) | L50 (k) | L75 (k) | Largest contig (Kbp) | Length (Mbp) | Misassemblies | Mismatches/100kbp | Indels/100kbp | Genes | Genes (Partial) | Genome Fraction |
---|---|---|---|---|---|---|---|---|---|---|---|---|
16-BR00583 | 2133.6bp | 1227.9bp | 0.0 | 0.0 | 2133.6bp | 3.4bp | 1.0 | 23.04 | 2.72 | 3410 | 9 | 99.5% |
16-BR00583_broken | 427.0bp | 315.3bp | 0.0 | 0.0 | 629.9bp | 3.3bp | 0.0 | 23.04 | 2.57 | 3409 | 10 | 99.5% |
16-BR00585 | 2154.5bp | 1224.7bp | 0.0 | 0.0 | 2154.5bp | 3.4bp | 1.0 | 4.05 | 1.12 | 3395 | 17 | 99.5% |
16-BR00585_broken | 191.9bp | 140.6bp | 0.0 | 0.0 | 897.8bp | 3.3bp | 0.0 | 4.11 | 0.88 | 3393 | 19 | 99.5% |
16-BR00586 | 2243.1bp | 1086.4bp | 0.0 | 0.0 | 2243.1bp | 3.3bp | 2.0 | 22.28 | 2.69 | 3411 | 9 | 99.5% |
16-BR00586_broken | 377.1bp | 309.8bp | 0.0 | 0.0 | 641.6bp | 3.3bp | 1.0 | 23.57 | 2.81 | 3411 | 10 | 99.5% |
16-BR00587 | 2182.3bp | 1229.8bp | 0.0 | 0.0 | 2182.3bp | 3.4bp | 1.0 | 23.67 | 3.05 | 3411 | 8 | 99.5% |
16-BR00587_broken | 444.5bp | 209.3bp | 0.0 | 0.0 | 642.1bp | 3.3bp | 0.0 | 23.67 | 2.96 | 3411 | 8 | 99.5% |
16-BR00588 | 2239.4bp | 1086.1bp | 0.0 | 0.0 | 2239.4bp | 3.3bp | 1.0 | 23.58 | 2.90 | 3406 | 12 | 99.5% |
16-BR00588_broken | 423.5bp | 209.2bp | 0.0 | 0.0 | 465.9bp | 3.3bp | 0.0 | 23.58 | 2.78 | 3403 | 15 | 99.5% |
16-BR00598 | 2167.4bp | 1224.7bp | 0.0 | 0.0 | 2167.4bp | 3.4bp | 1.0 | 4.02 | 1.24 | 3402 | 8 | 99.5% |
16-BR00598_broken | 533.1bp | 459.2bp | 0.0 | 0.0 | 1018.0bp | 3.3bp | 0.0 | 4.02 | 1.09 | 3402 | 7 | 99.5% |
16-BR00603 | 2241.0bp | 1089.4bp | 0.0 | 0.0 | 2241.0bp | 3.3bp | 2.0 | 24.18 | 3.02 | 3406 | 12 | 99.5% |
16-BR00603_broken | 424.1bp | 309.7bp | 0.0 | 0.0 | 1046.9bp | 3.3bp | 0.0 | 24.18 | 2.90 | 3406 | 12 | 99.5% |
16-BR00605 | 2239.0bp | 1085.5bp | 0.0 | 0.0 | 2239.0bp | 3.3bp | 1.0 | 21.56 | 2.96 | 3405 | 13 | 99.5% |
16-BR00605_broken | 674.6bp | 309.8bp | 0.0 | 0.0 | 1011.1bp | 3.3bp | 0.0 | 21.41 | 2.72 | 3404 | 14 | 99.5% |
16-BR00623 | 2241.6bp | 1092.4bp | 0.0 | 0.0 | 2241.6bp | 3.3bp | 3.0 | 22.25 | 2.81 | 3405 | 12 | 99.5% |
16-BR00623_broken | 356.1bp | 309.6bp | 0.0 | 0.0 | 642.0bp | 3.3bp | 2.0 | 24.67 | 2.90 | 3404 | 13 | 99.5% |
16-BR00624 | 2133.8bp | 1228.5bp | 0.0 | 0.0 | 2133.8bp | 3.4bp | 1.0 | 23.34 | 3.02 | 3407 | 12 | 99.5% |
16-BR00624_broken | 427.0bp | 202.1bp | 0.0 | 0.0 | 671.5bp | 3.3bp | 0.0 | 23.25 | 2.84 | 3407 | 12 | 99.5% |
16-BR00626 | 2197.5bp | 1224.5bp | 0.0 | 0.0 | 2197.5bp | 3.4bp | 3.0 | 22.77 | 2.69 | 3406 | 12 | 99.5% |
16-BR00626_broken | 457.6bp | 170.3bp | 0.0 | 0.0 | 916.6bp | 3.3bp | 2.0 | 22.64 | 2.60 | 3406 | 12 | 99.5% |
16-BR00631 | 2099.5bp | 1241.9bp | 0.0 | 0.0 | 2099.5bp | 3.3bp | 1.0 | 23.22 | 2.84 | 3410 | 9 | 99.5% |
16-BR00631_broken | 457.6bp | 211.8bp | 0.0 | 0.0 | 641.1bp | 3.3bp | 0.0 | 23.19 | 2.69 | 3409 | 10 | 99.5% |
16-BR00632 | 2237.9bp | 1087.5bp | 0.0 | 0.0 | 2237.9bp | 3.3bp | 1.0 | 3.48 | 1.06 | 3401 | 9 | 99.5% |
16-BR00632_broken | 465.8bp | 309.9bp | 0.0 | 0.0 | 745.3bp | 3.3bp | 0.0 | 3.51 | 1.00 | 3400 | 9 | 99.5% |
16-BR00638 | 2198.7bp | 1229.7bp | 0.0 | 0.0 | 2198.7bp | 3.4bp | 1.0 | 3.38 | 1.18 | 3415 | 6 | 99.5% |
16-BR00638_broken | 457.7bp | 209.2bp | 0.0 | 0.0 | 641.1bp | 3.3bp | 0.0 | 3.41 | 1.03 | 3415 | 8 | 99.6% |
16-BR00645 | 2237.3bp | 1090.3bp | 0.0 | 0.0 | 2237.3bp | 3.3bp | 1.0 | 24.03 | 2.90 | 3410 | 9 | 99.5% |
16-BR00645_broken | 427.1bp | 304.4bp | 0.0 | 0.0 | 850.1bp | 3.3bp | 0.0 | 24.00 | 2.81 | 3409 | 10 | 99.5% |
16-BR00647 | 2111.0bp | 1225.2bp | 0.0 | 0.0 | 2111.0bp | 3.3bp | 1.0 | 23.45 | 2.84 | 3385 | 21 | 99.3% |
16-BR00647_broken | 224.1bp | 139.2bp | 0.0 | 0.0 | 518.9bp | 3.3bp | 0.0 | 23.84 | 2.72 | 3385 | 21 | 99.3% |
16-BR00648 | 2241.4bp | 1084.5bp | 0.0 | 0.0 | 2241.4bp | 3.3bp | 1.0 | 23.65 | 3.05 | 3407 | 9 | 99.5% |
16-BR00648_broken | 356.0bp | 309.8bp | 0.0 | 0.0 | 641.7bp | 3.3bp | 0.0 | 23.65 | 2.90 | 3406 | 10 | 99.5% |
16-BR00649 | 2234.9bp | 1086.5bp | 0.0 | 0.0 | 2234.9bp | 3.3bp | 1.0 | 3.48 | 1.51 | 3397 | 16 | 99.5% |
16-BR00649_broken | 319.8bp | 139.4bp | 0.0 | 0.0 | 1106.7bp | 3.3bp | 0.0 | 3.66 | 1.33 | 3392 | 21 | 99.5% |
16-BR00650 | 2095.3bp | 1227.3bp | 0.0 | 0.0 | 2095.3bp | 3.3bp | 2.0 | 2.87 | 1.36 | 3403 | 9 | 99.5% |
16-BR00650_broken | 377.3bp | 205.7bp | 0.0 | 0.0 | 818.0bp | 3.3bp | 0.0 | 2.87 | 1.24 | 3403 | 9 | 99.5% |
16-BR00651 | 2098.4bp | 1229.3bp | 0.0 | 0.0 | 2098.4bp | 3.3bp | 1.0 | 5.14 | 1.54 | 3405 | 7 | 99.6% |
16-BR00651_broken | 533.2bp | 198.2bp | 0.0 | 0.0 | 690.5bp | 3.3bp | 0.0 | 5.14 | 1.45 | 3404 | 8 | 99.5% |
16-BR00652 | 2196.7bp | 1225.2bp | 0.0 | 0.0 | 2196.7bp | 3.4bp | 1.0 | 24.85 | 3.24 | 3386 | 20 | 99.3% |
16-BR00652_broken | 184.5bp | 135.8bp | 0.0 | 0.0 | 519.0bp | 3.3bp | 0.0 | 24.79 | 2.97 | 3386 | 20 | 99.3% |
16-BR00653 | 2239.2bp | 1089.5bp | 0.0 | 0.0 | 2239.2bp | 3.3bp | 1.0 | 23.43 | 2.84 | 3406 | 11 | 99.5% |
16-BR00653_broken | 309.8bp | 271.1bp | 0.0 | 0.0 | 850.0bp | 3.3bp | 0.0 | 23.40 | 2.69 | 3406 | 11 | 99.5% |
16-BR00654 | 2232.9bp | 1091.5bp | 0.0 | 0.0 | 2232.9bp | 3.3bp | 1.0 | 4.08 | 1.30 | 3397 | 14 | 99.5% |
16-BR00654_broken | 425.6bp | 253.3bp | 0.0 | 0.0 | 891.6bp | 3.3bp | 0.0 | 4.26 | 1.21 | 3395 | 16 | 99.5% |
16-BR00655 | 2237.9bp | 1089.3bp | 0.0 | 0.0 | 2237.9bp | 3.3bp | 1.0 | 3.69 | 1.06 | 3404 | 9 | 99.6% |
16-BR00655_broken | 363.9bp | 310.0bp | 0.0 | 0.0 | 675.4bp | 3.3bp | 0.0 | 3.69 | 1.03 | 3404 | 9 | 99.6% |
16-BR00656 | 2094.3bp | 1227.6bp | 0.0 | 0.0 | 2094.3bp | 3.3bp | 1.0 | 3.20 | 1.39 | 3401 | 10 | 99.6% |
16-BR00656_broken | 377.3bp | 356.1bp | 0.0 | 0.0 | 519.6bp | 3.3bp | 0.0 | 3.90 | 1.24 | 3399 | 12 | 99.6% |
16-BR00657 | 2196.8bp | 1226.9bp | 0.0 | 0.0 | 2196.8bp | 3.4bp | 1.0 | 23.73 | 2.99 | 3406 | 11 | 99.5% |
16-BR00657_broken | 448.0bp | 275.0bp | 0.0 | 0.0 | 607.9bp | 3.3bp | 0.0 | 23.76 | 2.84 | 3406 | 11 | 99.5% |
16-BR00658 | 2200.1bp | 1228.1bp | 0.0 | 0.0 | 2200.1bp | 3.4bp | 1.0 | 23.13 | 2.75 | 3404 | 13 | 99.5% |
16-BR00658_broken | 395.3bp | 170.3bp | 0.0 | 0.0 | 463.1bp | 3.3bp | 0.0 | 23.07 | 2.60 | 3405 | 12 | 99.5% |
16-BR00659 | 2133.4bp | 1226.1bp | 0.0 | 0.0 | 2133.4bp | 3.4bp | 1.0 | 25.00 | 3.26 | 3407 | 11 | 99.5% |
16-BR00659_broken | 513.0bp | 400.0bp | 0.0 | 0.0 | 629.8bp | 3.3bp | 0.0 | 24.76 | 3.05 | 3405 | 13 | 99.5% |
16-BR00660 | 2118.5bp | 1226.1bp | 0.0 | 0.0 | 2118.5bp | 3.3bp | 1.0 | 23.25 | 2.75 | 3408 | 11 | 99.5% |
16-BR00660_broken | 377.6bp | 209.4bp | 0.0 | 0.0 | 641.6bp | 3.3bp | 0.0 | 24.34 | 2.99 | 3407 | 12 | 99.5% |
16-BR00661 | 2240.5bp | 1085.8bp | 0.0 | 0.0 | 2240.5bp | 3.3bp | 1.0 | 23.89 | 2.75 | 3407 | 9 | 99.5% |
16-BR00661_broken | 465.9bp | 309.8bp | 0.0 | 0.0 | 641.5bp | 3.3bp | 0.0 | 23.85 | 2.69 | 3408 | 10 | 99.5% |
16-BR00662 | 2237.8bp | 1086.0bp | 0.0 | 0.0 | 2237.8bp | 3.3bp | 1.0 | 24.28 | 2.99 | 3404 | 13 | 99.5% |
16-BR00662_broken | 317.8bp | 208.7bp | 0.0 | 0.0 | 693.1bp | 3.3bp | 0.0 | 24.25 | 2.78 | 3402 | 15 | 99.5% |
17-BR00001 | 2181.1bp | 747.6bp | 0.0 | 0.0 | 2181.1bp | 3.3bp | 2.0 | 5.55 | 1.67 | 3140 | 4 | 99.5% |
17-BR00001_broken | 377.0bp | 187.8bp | 0.0 | 0.0 | 509.2bp | 3.3bp | 1.0 | 5.86 | 1.61 | 3138 | 6 | 99.5% |
17-BR00002 | 2379.1bp | 984.2bp | 0.0 | 0.0 | 2379.1bp | 3.4bp | 4.0 | 6.25 | 1.70 | 3168 | 11 | 99.4% |
17-BR00002_broken | 462.7bp | 300.0bp | 0.0 | 0.0 | 643.8bp | 3.3bp | 2.0 | 6.26 | 1.58 | 3165 | 11 | 99.3% |
17-BR00003 | 2197.1bp | 1103.1bp | 0.0 | 0.0 | 2197.1bp | 3.3bp | 3.0 | 5.10 | 1.70 | 3162 | 15 | 99.4% |
17-BR00003_broken | 227.7bp | 105.0bp | 0.0 | 0.0 | 428.9bp | 3.3bp | 2.0 | 5.99 | 1.34 | 3155 | 22 | 99.3% |
17-BR00004 | 2179.5bp | 1118.8bp | 0.0 | 0.0 | 2179.5bp | 3.4bp | 1.0 | 6.08 | 1.55 | 3165 | 12 | 99.4% |
17-BR00004_broken | 133.4bp | 90.4bp | 0.0 | 0.0 | 364.4bp | 3.3bp | 1.0 | 6.20 | 1.28 | 3160 | 16 | 99.3% |
17-BR00005 | 2551.5bp | 2551.5bp | 0.0 | 0.0 | 2551.5bp | 3.3bp | 4.0 | 5.19 | 1.49 | 3127 | 15 | 99.4% |
17-BR00005_broken | 371.5bp | 259.3bp | 0.0 | 0.0 | 500.4bp | 3.3bp | 2.0 | 5.56 | 1.52 | 3126 | 16 | 99.4% |
17-BR00006 | 2173.8bp | 736.9bp | 0.0 | 0.0 | 2173.8bp | 3.3bp | 2.0 | 5.37 | 1.76 | 3138 | 8 | 99.5% |
17-BR00006_broken | 390.8bp | 207.6bp | 0.0 | 0.0 | 530.5bp | 3.3bp | 1.0 | 5.55 | 1.52 | 3137 | 9 | 99.5% |
17-BR00007 | 2171.8bp | 988.6bp | 0.0 | 0.0 | 2171.8bp | 3.2bp | 2.0 | 5.72 | 1.79 | 2925 | 9 | 92.9% |
17-BR00007_broken | 251.3bp | 156.4bp | 0.0 | 0.0 | 560.3bp | 3.1bp | 2.0 | 5.88 | 1.69 | 2925 | 9 | 92.9% |
17-BR00008 | 2565.7bp | 2565.7bp | 0.0 | 0.0 | 2565.7bp | 3.3bp | 2.0 | 5.46 | 1.64 | 3134 | 7 | 99.4% |
17-BR00008_broken | 377.2bp | 208.0bp | 0.0 | 0.0 | 530.4bp | 3.3bp | 1.0 | 5.46 | 1.52 | 3134 | 7 | 99.5% |
17-BR00009 | 2347.0bp | 983.8bp | 0.0 | 0.0 | 2347.0bp | 3.3bp | 2.0 | 5.46 | 1.46 | 3169 | 8 | 99.4% |
17-BR00009_broken | 456.7bp | 222.6bp | 0.0 | 0.0 | 585.2bp | 3.3bp | 1.0 | 5.43 | 1.21 | 3168 | 9 | 99.4% |
17-BR00010 | 2379.8bp | 982.8bp | 0.0 | 0.0 | 2379.8bp | 3.4bp | 4.0 | 3.16 | 1.09 | 3170 | 8 | 99.4% |
17-BR00010_broken | 463.8bp | 342.5bp | 0.0 | 0.0 | 758.8bp | 3.3bp | 2.0 | 3.61 | 1.18 | 3170 | 8 | 99.4% |
17-BR00011 | 2650.5bp | 2650.5bp | 0.0 | 0.0 | 2650.5bp | 3.4bp | 4.0 | 5.46 | 1.70 | 3137 | 8 | 99.5% |
17-BR00011_broken | 431.7bp | 208.0bp | 0.0 | 0.0 | 585.1bp | 3.3bp | 2.0 | 5.46 | 1.58 | 3137 | 8 | 99.5% |
17-BR00012 | 2362.5bp | 1057.2bp | 0.0 | 0.0 | 2362.5bp | 3.4bp | 2.0 | 5.86 | 1.82 | 3138 | 5 | 99.5% |
17-BR00012_broken | 357.1bp | 156.4bp | 0.0 | 0.0 | 831.0bp | 3.3bp | 1.0 | 5.86 | 1.67 | 3138 | 5 | 99.5% |
17-BR00013 | 2347.3bp | 983.4bp | 0.0 | 0.0 | 2347.3bp | 3.3bp | 2.0 | 5.34 | 1.34 | 3169 | 9 | 99.5% |
17-BR00013_broken | 456.7bp | 300.2bp | 0.0 | 0.0 | 887.7bp | 3.3bp | 1.0 | 5.37 | 1.27 | 3169 | 9 | 99.5% |
17-BR00014 | 2349.0bp | 983.4bp | 0.0 | 0.0 | 2349.0bp | 3.3bp | 2.0 | 3.16 | 1.76 | 3171 | 8 | 99.5% |
17-BR00014_broken | 443.7bp | 256.0bp | 0.0 | 0.0 | 773.7bp | 3.3bp | 1.0 | 3.55 | 1.70 | 3169 | 10 | 99.5% |
17-BR00015 | 2349.9bp | 984.4bp | 0.0 | 0.0 | 2349.9bp | 3.3bp | 2.0 | 5.40 | 1.61 | 3170 | 9 | 99.5% |
17-BR00015_broken | 390.8bp | 252.5bp | 0.0 | 0.0 | 584.3bp | 3.3bp | 1.0 | 5.37 | 1.37 | 3170 | 9 | 99.5% |
17-BR00016 | 2348.7bp | 983.1bp | 0.0 | 0.0 | 2348.7bp | 3.3bp | 2.0 | 5.89 | 1.76 | 3171 | 8 | 99.5% |
17-BR00016_broken | 302.3bp | 222.7bp | 0.0 | 0.0 | 584.3bp | 3.3bp | 1.0 | 5.89 | 1.64 | 3170 | 9 | 99.5% |
17-BR00017 | 2334.1bp | 984.7bp | 0.0 | 0.0 | 2334.1bp | 3.3bp | 5.0 | 4.83 | 1.64 | 3170 | 8 | 99.5% |
17-BR00017_broken | 580.6bp | 299.9bp | 0.0 | 0.0 | 647.5bp | 3.3bp | 3.0 | 4.62 | 1.37 | 3167 | 8 | 99.4% |
17-BR00018 | 2348.4bp | 984.9bp | 0.0 | 0.0 | 2348.4bp | 3.3bp | 2.0 | 3.94 | 1.40 | 3171 | 9 | 99.5% |
17-BR00018_broken | 437.4bp | 158.7bp | 0.0 | 0.0 | 699.9bp | 3.3bp | 1.0 | 5.55 | 1.43 | 3170 | 10 | 99.5% |
17-BR00019 | 2455.0bp | 983.1bp | 0.0 | 0.0 | 2455.0bp | 3.4bp | 4.0 | 3.97 | 1.49 | 3171 | 8 | 99.5% |
17-BR00019_broken | 569.0bp | 222.7bp | 0.0 | 0.0 | 758.8bp | 3.3bp | 2.0 | 3.97 | 1.37 | 3171 | 8 | 99.5% |
17-BR00020 | 2347.9bp | 983.0bp | 0.0 | 0.0 | 2347.9bp | 3.3bp | 2.0 | 5.10 | 1.88 | 3171 | 9 | 99.5% |
17-BR00020_broken | 580.4bp | 299.9bp | 0.0 | 0.0 | 620.1bp | 3.3bp | 1.0 | 5.16 | 1.70 | 3170 | 10 | 99.5% |
17-BR00021 | 2454.0bp | 982.9bp | 0.0 | 0.0 | 2454.0bp | 3.4bp | 4.0 | 5.37 | 1.82 | 3173 | 7 | 99.5% |
17-BR00021_broken | 568.9bp | 299.7bp | 0.0 | 0.0 | 672.5bp | 3.3bp | 2.0 | 5.37 | 1.67 | 3172 | 8 | 99.5% |
17-BR00022 | 2277.4bp | 986.5bp | 0.0 | 0.0 | 2277.4bp | 3.4bp | 3.0 | 4.40 | 1.46 | 3174 | 5 | 99.5% |
17-BR00022_broken | 460.1bp | 256.4bp | 0.0 | 0.0 | 686.0bp | 3.3bp | 2.0 | 4.40 | 1.33 | 3172 | 7 | 99.5% |
17-BR00023 | 2350.3bp | 983.1bp | 0.0 | 0.0 | 2350.3bp | 3.3bp | 2.0 | 4.00 | 1.24 | 3173 | 6 | 99.5% |
17-BR00023_broken | 473.2bp | 208.3bp | 0.0 | 0.0 | 840.3bp | 3.3bp | 1.0 | 5.40 | 1.46 | 3172 | 7 | 99.5% |
17-BR00024 | 2330.0bp | 983.0bp | 0.0 | 0.0 | 2330.0bp | 3.5bp | 5.0 | 4.52 | 1.43 | 3172 | 8 | 99.5% |
17-BR00024_broken | 470.9bp | 256.6bp | 0.0 | 0.0 | 686.0bp | 3.3bp | 3.0 | 4.52 | 1.34 | 3172 | 8 | 99.5% |
17-BR00271 | 2458.8bp | 839.8bp | 0.0 | 0.0 | 2458.8bp | 3.3bp | 5.0 | 20.17 | 2.04 | 3380 | 15 | 99.5% |
17-BR00271_broken | 599.3bp | 462.6bp | 0.0 | 0.0 | 792.0bp | 3.3bp | 4.0 | 20.17 | 1.95 | 3380 | 15 | 99.5% |
17-BR00273 | 2370.7bp | 1012.7bp | 0.0 | 0.0 | 2370.7bp | 3.4bp | 2.0 | 5.47 | 2.02 | 3448 | 18 | 98.9% |
17-BR00273_broken | 281.5bp | 200.5bp | 0.0 | 0.0 | 540.6bp | 3.4bp | 1.0 | 5.68 | 1.93 | 3446 | 18 | 98.8% |
17-BR00274 | 2187.4bp | 1090.4bp | 0.0 | 0.0 | 2187.4bp | 3.4bp | 22.0 | 28.90 | 5.76 | 3083 | 41 | 98.6% |
17-BR00274_broken | 261.9bp | 196.1bp | 0.0 | 0.0 | 582.2bp | 3.3bp | 19.0 | 29.14 | 5.69 | 3084 | 38 | 98.6% |
17-BR00275 | 2275.5bp | 1100.6bp | 0.0 | 0.0 | 2275.5bp | 3.4bp | 16.0 | 29.16 | 5.88 | 3084 | 42 | 98.6% |
17-BR00275_broken | 253.2bp | 179.4bp | 0.0 | 0.0 | 590.6bp | 3.3bp | 13.0 | 29.17 | 5.76 | 3083 | 42 | 98.6% |
17-BR00276 | 2235.9bp | 1109.7bp | 0.0 | 0.0 | 2235.9bp | 3.4bp | 21.0 | 28.94 | 5.72 | 3087 | 39 | 98.6% |
17-BR00276_broken | 259.6bp | 182.4bp | 0.0 | 0.0 | 451.7bp | 3.3bp | 18.0 | 28.68 | 5.63 | 3085 | 39 | 98.6% |
17-BR00277 | 2279.0bp | 1122.4bp | 0.0 | 0.0 | 2279.0bp | 3.4bp | 24.0 | 27.24 | 5.69 | 3086 | 45 | 98.6% |
17-BR00277_broken | 219.0bp | 127.9bp | 0.0 | 0.0 | 582.6bp | 3.3bp | 19.0 | 27.88 | 5.54 | 3078 | 49 | 98.6% |
17-BR00278 | 2238.5bp | 1109.3bp | 0.0 | 0.0 | 2238.5bp | 3.3bp | 18.0 | 27.79 | 5.48 | 3089 | 35 | 98.6% |
17-BR00278_broken | 196.2bp | 156.5bp | 0.0 | 0.0 | 591.0bp | 3.3bp | 16.0 | 30.38 | 5.81 | 3088 | 35 | 98.6% |
17-BR00279 | 2394.8bp | 1013.7bp | 0.0 | 0.0 | 2394.8bp | 3.4bp | 5.0 | 5.09 | 2.00 | 3434 | 26 | 98.8% |
17-BR00279_broken | 317.8bp | 200.7bp | 0.0 | 0.0 | 587.9bp | 3.4bp | 3.0 | 5.54 | 1.94 | 3432 | 27 | 98.8% |
17-BR00280 | 2369.9bp | 1008.6bp | 0.0 | 0.0 | 2369.9bp | 3.4bp | 2.0 | 5.36 | 2.20 | 3442 | 23 | 98.8% |
17-BR00280_broken | 307.6bp | 200.6bp | 0.0 | 0.0 | 536.4bp | 3.4bp | 2.0 | 5.51 | 1.93 | 3441 | 24 | 98.8% |
17-BR00281 | 2318.7bp | 1057.3bp | 0.0 | 0.0 | 2318.7bp | 3.4bp | 49.0 | 7.69 | 2.92 | 2605 | 60 | 99.2% |
17-BR00281_broken | 128.7bp | 69.9bp | 0.0 | 0.0 | 384.5bp | 3.3bp | 40.0 | 7.75 | 2.74 | 2606 | 57 | 99.2% |
17-BR00282 | 2130.0bp | 1179.3bp | 0.0 | 0.0 | 2130.0bp | 3.3bp | 50.0 | 7.83 | 2.79 | 2614 | 55 | 99.3% |
17-BR00282_broken | 155.9bp | 85.0bp | 0.0 | 0.0 | 382.2bp | 3.3bp | 53.0 | 8.02 | 2.58 | 2615 | 53 | 99.3% |
17-BR00283 | 2451.2bp | 840.1bp | 0.0 | 0.0 | 2451.2bp | 3.3bp | 3.0 | 5.70 | 1.43 | 3172 | 6 | 99.6% |
17-BR00283_broken | 532.0bp | 332.7bp | 0.0 | 0.0 | 863.3bp | 3.3bp | 1.0 | 5.82 | 1.31 | 3170 | 8 | 99.5% |
17-BR00284 | 2131.1bp | 1024.5bp | 0.0 | 0.0 | 2131.1bp | 3.2bp | 2.0 | 12.78 | 3.06 | 3189 | 15 | 94.7% |
17-BR00284_broken | 359.5bp | 142.5bp | 0.0 | 0.0 | 454.2bp | 3.1bp | 1.0 | 13.07 | 2.81 | 3187 | 17 | 94.7% |
17-BR00285 | 2354.4bp | 982.6bp | 0.0 | 0.0 | 2354.4bp | 3.4bp | 4.0 | 50.90 | 5.31 | 3357 | 25 | 99.2% |
17-BR00285_broken | 291.7bp | 216.9bp | 0.0 | 0.0 | 643.8bp | 3.3bp | 3.0 | 50.90 | 5.16 | 3356 | 25 | 99.2% |
17-BR00286 | 2133.0bp | 1025.8bp | 0.0 | 0.0 | 2133.0bp | 3.2bp | 1.0 | 19.25 | 2.49 | 3179 | 23 | 94.6% |
17-BR00286_broken | 251.7bp | 116.7bp | 0.0 | 0.0 | 557.6bp | 3.1bp | 1.0 | 17.66 | 2.20 | 3178 | 24 | 94.6% |
17-BR00287 | 2130.6bp | 1024.5bp | 0.0 | 0.0 | 2130.6bp | 3.2bp | 4.0 | 20.56 | 2.74 | 3191 | 13 | 94.7% |
17-BR00287_broken | 358.8bp | 235.5bp | 0.0 | 0.0 | 845.5bp | 3.1bp | 4.0 | 18.49 | 2.52 | 3191 | 12 | 94.7% |
17-BR00288 | 2129.3bp | 1025.4bp | 0.0 | 0.0 | 2129.3bp | 3.2bp | 5.0 | 18.28 | 2.58 | 3184 | 18 | 94.7% |
17-BR00288_broken | 358.6bp | 160.3bp | 0.0 | 0.0 | 454.3bp | 3.1bp | 4.0 | 17.61 | 2.33 | 3183 | 19 | 94.6% |
17-BR00289 | 2135.7bp | 1024.6bp | 0.0 | 0.0 | 2135.7bp | 3.2bp | 1.0 | 10.90 | 2.65 | 3192 | 13 | 94.7% |
17-BR00289_broken | 359.5bp | 189.8bp | 0.0 | 0.0 | 978.0bp | 3.1bp | 1.0 | 11.86 | 2.52 | 3191 | 14 | 94.7% |
17-BR00290 | 2127.6bp | 1025.7bp | 0.0 | 0.0 | 2127.6bp | 3.2bp | 0.0 | 13.96 | 2.36 | 3193 | 12 | 94.7% |
17-BR00290_broken | 360.9bp | 209.3bp | 0.0 | 0.0 | 641.5bp | 3.1bp | 1.0 | 13.96 | 2.20 | 3193 | 12 | 94.7% |
17-BR00291 | 2133.1bp | 1031.7bp | 0.0 | 0.0 | 2133.1bp | 3.2bp | 2.0 | 10.30 | 2.23 | 3193 | 10 | 94.7% |
17-BR00291_broken | 442.4bp | 189.8bp | 0.0 | 0.0 | 856.5bp | 3.1bp | 1.0 | 11.57 | 2.39 | 3190 | 14 | 94.7% |
17-BR00292 | 2128.7bp | 1206.0bp | 0.0 | 0.0 | 2128.7bp | 3.3bp | 2.0 | 7.91 | 1.91 | 3192 | 12 | 94.7% |
17-BR00292_broken | 394.0bp | 189.7bp | 0.0 | 0.0 | 636.2bp | 3.1bp | 2.0 | 7.91 | 1.56 | 3189 | 14 | 94.7% |
17-BR00293 | 2136.4bp | 1027.1bp | 0.0 | 0.0 | 2136.4bp | 3.2bp | 4.0 | 14.09 | 2.45 | 3192 | 14 | 94.7% |
17-BR00293_broken | 440.1bp | 190.7bp | 0.0 | 0.0 | 866.8bp | 3.1bp | 6.0 | 14.76 | 2.39 | 3192 | 14 | 94.7% |
17-BR00294 | 2237.5bp | 1024.6bp | 0.0 | 0.0 | 2237.5bp | 3.3bp | 4.0 | 16.23 | 2.58 | 3189 | 15 | 94.7% |
17-BR00294_broken | 359.0bp | 276.5bp | 0.0 | 0.0 | 724.9bp | 3.1bp | 2.0 | 14.93 | 2.46 | 3189 | 15 | 94.7% |
17-BR00295 | 2126.3bp | 2126.3bp | 0.0 | 0.0 | 2126.3bp | 2.7bp | 5.0 | 15.95 | 2.53 | 2739 | 11 | 81.0% |
17-BR00295_broken | 447.1bp | 167.0bp | 0.0 | 0.0 | 453.3bp | 2.7bp | 3.0 | 16.62 | 2.31 | 2737 | 13 | 81.0% |
17-BR00296 | 2128.4bp | 1208.2bp | 0.0 | 0.0 | 2128.4bp | 3.3bp | 4.0 | 13.00 | 2.71 | 3192 | 13 | 94.7% |
17-BR00296_broken | 394.3bp | 189.8bp | 0.0 | 0.0 | 610.8bp | 3.1bp | 2.0 | 13.40 | 2.52 | 3189 | 14 | 94.6% |
17-BR00297 | 2131.1bp | 1033.9bp | 0.0 | 0.0 | 2131.1bp | 3.2bp | 4.0 | 16.06 | 2.36 | 3193 | 12 | 94.7% |
17-BR00297_broken | 500.6bp | 454.3bp | 0.0 | 0.0 | 568.7bp | 3.1bp | 4.0 | 18.68 | 2.45 | 3193 | 11 | 94.7% |
17-BR00298 | 2130.7bp | 1024.4bp | 0.0 | 0.0 | 2130.7bp | 3.3bp | 2.0 | 12.37 | 2.14 | 3194 | 9 | 94.7% |
17-BR00298_broken | 454.1bp | 390.7bp | 0.0 | 0.0 | 577.7bp | 3.1bp | 1.0 | 13.87 | 1.98 | 3190 | 13 | 94.7% |
17-BR00299 | 2480.9bp | 2480.9bp | 0.0 | 0.0 | 2480.9bp | 3.3bp | 3.0 | 0.61 | 1.01 | 3168 | 9 | 99.5% |
17-BR00299_broken | 539.2bp | 251.9bp | 0.0 | 0.0 | 689.1bp | 3.3bp | 1.0 | 0.61 | 0.98 | 3168 | 9 | 99.5% |
17-BR00300 | 2437.6bp | 873.2bp | 0.0 | 0.0 | 2437.6bp | 3.4bp | 4.0 | 23.24 | 2.68 | 3378 | 19 | 99.5% |
17-BR00300_broken | 305.9bp | 200.8bp | 0.0 | 0.0 | 646.1bp | 3.3bp | 3.0 | 23.24 | 2.59 | 3378 | 18 | 99.5% |
17-BR00301 | 2426.5bp | 984.4bp | 0.0 | 0.0 | 2426.5bp | 3.4bp | 4.0 | 23.00 | 2.59 | 3383 | 13 | 99.5% |
17-BR00301_broken | 394.6bp | 189.6bp | 0.0 | 0.0 | 730.7bp | 3.3bp | 3.0 | 23.00 | 2.53 | 3383 | 13 | 99.5% |
17-BR00302 | 2463.8bp | 843.3bp | 0.0 | 0.0 | 2463.8bp | 3.3bp | 3.0 | 22.94 | 2.46 | 3381 | 16 | 99.5% |
17-BR00302_broken | 367.3bp | 293.5bp | 0.0 | 0.0 | 730.7bp | 3.3bp | 2.0 | 22.90 | 2.37 | 3381 | 16 | 99.5% |
17-BR00303 | 2373.0bp | 1010.1bp | 0.0 | 0.0 | 2373.0bp | 3.4bp | 2.0 | 15.06 | 7.38 | 99.4% | ||
17-BR00303_broken | 440.0bp | 222.1bp | 0.0 | 0.0 | 646.6bp | 3.3bp | 1.0 | 15.43 | 7.44 | 99.4% | ||
17-BR00304 | 2552.1bp | 2552.1bp | 0.0 | 0.0 | 2552.1bp | 3.3bp | 5.0 | 52.93 | 5.10 | 3349 | 29 | 99.1% |
17-BR00304_broken | 389.8bp | 247.5bp | 0.0 | 0.0 | 715.5bp | 3.3bp | 4.0 | 52.93 | 4.92 | 3349 | 29 | 99.1% |
17-BR00305 | 2129.2bp | 1182.9bp | 0.0 | 0.0 | 2129.2bp | 3.3bp | 0.0 | 10.96 | 2.52 | 3339 | 15 | 99.4% |
17-BR00305_broken | 393.9bp | 172.0bp | 0.0 | 0.0 | 555.0bp | 3.3bp | 0.0 | 14.30 | 2.49 | 3338 | 16 | 99.4% |
17-BR00306 | 2466.5bp | 850.8bp | 0.0 | 0.0 | 2466.5bp | 3.4bp | 5.0 | 11.78 | 6.59 | 99.5% | ||
17-BR00306_broken | 223.0bp | 166.4bp | 0.0 | 0.0 | 596.8bp | 3.3bp | 2.0 | 13.24 | 7.47 | 99.5% | ||
17-BR00307 | 2557.4bp | 2557.4bp | 0.0 | 0.0 | 2557.4bp | 3.3bp | 3.0 | 12.96 | 2.35 | 3163 | 13 | 99.5% |
17-BR00307_broken | 464.9bp | 365.2bp | 0.0 | 0.0 | 866.8bp | 3.3bp | 1.0 | 12.90 | 2.26 | 3163 | 13 | 99.5% |
17-BR00308 | 2392.8bp | 1025.4bp | 0.0 | 0.0 | 2392.8bp | 3.5bp | 9.0 | 16.95 | 2.61 | 3338 | 16 | 99.4% |
17-BR00308_broken | 464.4bp | 156.2bp | 0.0 | 0.0 | 754.4bp | 3.4bp | 6.0 | 18.04 | 2.49 | 3336 | 18 | 99.4% |
17-BR00309 | 2132.7bp | 1178.8bp | 0.0 | 0.0 | 2132.7bp | 3.3bp | 2.0 | 32.79 | 3.95 | 3335 | 17 | 99.4% |
17-BR00309_broken | 873.3bp | 235.1bp | 0.0 | 0.0 | 896.9bp | 3.3bp | 2.0 | 32.85 | 3.86 | 3334 | 18 | 99.4% |
17-BR00310 | 2128.2bp | 1184.8bp | 0.0 | 0.0 | 2128.2bp | 3.3bp | 1.0 | 29.76 | 3.80 | 3331 | 22 | 99.3% |
17-BR00310_broken | 462.3bp | 189.6bp | 0.0 | 0.0 | 1023.1bp | 3.3bp | 1.0 | 32.74 | 3.92 | 3331 | 22 | 99.3% |
17-BR00311 | 2468.4bp | 849.7bp | 0.0 | 0.0 | 2468.4bp | 3.3bp | 1.0 | 12.38 | 7.10 | 99.5% | ||
17-BR00311_broken | 333.8bp | 188.3bp | 0.0 | 0.0 | 646.6bp | 3.3bp | 0.0 | 13.39 | 7.47 | 99.5% | ||
17-BR00312 | 2137.7bp | 1026.4bp | 0.0 | 0.0 | 2137.7bp | 3.3bp | 7.0 | 8.41 | 2.10 | 3193 | 14 | 94.8% |
17-BR00312_broken | 303.5bp | 139.4bp | 0.0 | 0.0 | 542.2bp | 3.1bp | 6.0 | 8.41 | 2.01 | 3193 | 14 | 94.8% |
17-BR00313 | 2134.2bp | 1026.5bp | 0.0 | 0.0 | 2134.2bp | 3.2bp | 3.0 | 12.88 | 2.61 | 3189 | 15 | 94.7% |
17-BR00313_broken | 276.2bp | 177.7bp | 0.0 | 0.0 | 475.5bp | 3.1bp | 2.0 | 13.11 | 2.46 | 3187 | 17 | 94.7% |
17-BR00314 | 2385.7bp | 964.5bp | 0.0 | 0.0 | 2385.7bp | 3.4bp | 87.0 | 164.42 | 15.11 | 3221 | 56 | 98.9% |
17-BR00314_broken | 125.6bp | 79.6bp | 0.0 | 0.0 | 283.5bp | 3.3bp | 87.0 | 173.76 | 15.59 | 3221 | 56 | 98.9% |
17-BR00315 | 2387.0bp | 970.6bp | 0.0 | 0.0 | 2387.0bp | 3.4bp | 89.0 | 161.16 | 14.71 | 3217 | 59 | 98.9% |
17-BR00315_broken | 199.9bp | 110.2bp | 0.0 | 0.0 | 377.6bp | 3.3bp | 87.0 | 171.84 | 15.35 | 3217 | 59 | 98.9% |
17-BR00316 | 2384.9bp | 966.4bp | 0.0 | 0.0 | 2384.9bp | 3.4bp | 90.0 | 168.28 | 15.04 | 3219 | 58 | 98.9% |
17-BR00316_broken | 196.1bp | 121.3bp | 0.0 | 0.0 | 380.2bp | 3.3bp | 87.0 | 173.94 | 15.50 | 3219 | 58 | 99.0% |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Prokka
Prokka is a software tool for the rapid annotation of prokaryotic genomes.
Sample Name | Organism | # contigs | # bases | # CDS | # tRNA |
---|---|---|---|---|---|
16-BR00583 | Genus species | 12 | 3366094 | 3167 | 53 |
16-BR00585 | Genus species | 3 | 3379298 | 3169 | 52 |
16-BR00586 | Genus species | 5 | 3329846 | 3151 | 54 |
16-BR00587 | Genus species | 4 | 3412332 | 3200 | 53 |
16-BR00588 | Genus species | 6 | 3326053 | 3152 | 53 |
16-BR00598 | Genus species | 5 | 3393175 | 3181 | 52 |
16-BR00603 | Genus species | 6 | 3330913 | 3163 | 53 |
16-BR00605 | Genus species | 4 | 3324754 | 3152 | 53 |
16-BR00623 | Genus species | 4 | 3334217 | 3164 | 54 |
16-BR00624 | Genus species | 5 | 3362714 | 3173 | 53 |
16-BR00626 | Genus species | 4 | 3422241 | 3183 | 52 |
16-BR00631 | Genus species | 6 | 3342023 | 3157 | 53 |
16-BR00632 | Genus species | 3 | 3325574 | 3165 | 52 |
16-BR00638 | Genus species | 6 | 3429075 | 3196 | 54 |
16-BR00645 | Genus species | 7 | 3329421 | 3159 | 53 |
16-BR00647 | Genus species | 6 | 3336806 | 3140 | 52 |
16-BR00648 | Genus species | 4 | 3326229 | 3158 | 52 |
16-BR00649 | Genus species | 4 | 3321799 | 3151 | 53 |
16-BR00650 | Genus species | 6 | 3323224 | 3152 | 53 |
16-BR00651 | Genus species | 3 | 3327863 | 3167 | 53 |
16-BR00652 | Genus species | 4 | 3422162 | 3165 | 52 |
16-BR00653 | Genus species | 5 | 3329153 | 3158 | 53 |
16-BR00654 | Genus species | 4 | 3324754 | 3153 | 54 |
16-BR00655 | Genus species | 5 | 3327694 | 3167 | 54 |
16-BR00656 | Genus species | 5 | 3322414 | 3154 | 54 |
16-BR00657 | Genus species | 6 | 3424245 | 3188 | 53 |
16-BR00658 | Genus species | 4 | 3428468 | 3191 | 54 |
16-BR00659 | Genus species | 5 | 3360022 | 3166 | 53 |
16-BR00660 | Genus species | 5 | 3344963 | 3172 | 53 |
16-BR00661 | Genus species | 5 | 3326666 | 3156 | 53 |
16-BR00662 | Genus species | 8 | 3324789 | 3151 | 53 |
17-BR00001 | Genus species | 8 | 3319284 | 3104 | 52 |
17-BR00002 | Genus species | 6 | 3367407 | 3124 | 53 |
17-BR00003 | Genus species | 11 | 3318629 | 3093 | 52 |
17-BR00004 | Genus species | 27 | 3393250 | 3134 | 53 |
17-BR00005 | Genus species | 17 | 3341723 | 3113 | 52 |
17-BR00006 | Genus species | 8 | 3315095 | 3108 | 54 |
17-BR00007 | Genus species | 2 | 3160355 | 2921 | 52 |
17-BR00008 | Genus species | 10 | 3316962 | 3106 | 51 |
17-BR00009 | Genus species | 4 | 3332115 | 3105 | 53 |
17-BR00010 | Genus species | 7 | 3416022 | 3142 | 53 |
17-BR00011 | Genus species | 10 | 3424945 | 3149 | 53 |
17-BR00012 | Genus species | 4 | 3446737 | 3154 | 53 |
17-BR00013 | Genus species | 6 | 3332418 | 3112 | 53 |
17-BR00014 | Genus species | 5 | 3333906 | 3111 | 53 |
17-BR00015 | Genus species | 4 | 3335641 | 3112 | 53 |
17-BR00016 | Genus species | 6 | 3333368 | 3110 | 53 |
17-BR00017 | Genus species | 3 | 3318857 | 3101 | 53 |
17-BR00018 | Genus species | 4 | 3333525 | 3106 | 54 |
17-BR00019 | Genus species | 5 | 3439674 | 3154 | 53 |
17-BR00020 | Genus species | 4 | 3332198 | 3108 | 53 |
17-BR00021 | Genus species | 5 | 3438519 | 3153 | 53 |
17-BR00022 | Genus species | 5 | 3386671 | 3142 | 53 |
17-BR00023 | Genus species | 6 | 3334962 | 3112 | 53 |
17-BR00024 | Genus species | 7 | 3483675 | 3175 | 53 |
17-BR00271 | Genus species | 4 | 3299073 | 3150 | 52 |
17-BR00273 | Genus species | 6 | 3384195 | 3187 | 53 |
17-BR00274 | Genus species | 15 | 3392865 | 3132 | 52 |
17-BR00275 | Genus species | 12 | 3379519 | 3127 | 52 |
17-BR00276 | Genus species | 12 | 3369798 | 3128 | 53 |
17-BR00277 | Genus species | 17 | 3404559 | 3137 | 55 |
17-BR00278 | Genus species | 8 | 3349025 | 3120 | 53 |
17-BR00279 | Genus species | 5 | 3409137 | 3187 | 55 |
17-BR00280 | Genus species | 11 | 3382895 | 3169 | 53 |
17-BR00281 | Genus species | 14 | 3386138 | 3176 | 54 |
17-BR00282 | Genus species | 10 | 3337515 | 3177 | 54 |
17-BR00283 | Genus species | 4 | 3294673 | 3139 | 53 |
17-BR00284 | Genus species | 3 | 3155773 | 3008 | 52 |
17-BR00285 | Genus species | 5 | 3356745 | 3154 | 52 |
17-BR00286 | Genus species | 2 | 3158839 | 2997 | 52 |
17-BR00287 | Genus species | 2 | 3155112 | 3014 | 52 |
17-BR00288 | Genus species | 3 | 3154838 | 3004 | 52 |
17-BR00289 | Genus species | 2 | 3160272 | 3016 | 52 |
17-BR00290 | Genus species | 3 | 3153440 | 3001 | 52 |
17-BR00291 | Genus species | 4 | 3165188 | 3005 | 52 |
17-BR00292 | Genus species | 5 | 3336425 | 3078 | 52 |
17-BR00293 | Genus species | 4 | 3163909 | 3014 | 52 |
17-BR00294 | Genus species | 3 | 3262358 | 3038 | 52 |
17-BR00295 | Genus species | 3 | 2697644 | 2563 | 51 |
17-BR00296 | Genus species | 3 | 3336890 | 3088 | 52 |
17-BR00297 | Genus species | 3 | 3165118 | 3022 | 53 |
17-BR00298 | Genus species | 5 | 3274048 | 3048 | 52 |
17-BR00299 | Genus species | 5 | 3289431 | 3133 | 51 |
17-BR00300 | Genus species | 8 | 3425882 | 3206 | 53 |
17-BR00301 | Genus species | 7 | 3411990 | 3199 | 53 |
17-BR00302 | Genus species | 6 | 3309002 | 3163 | 53 |
17-BR00303 | Genus species | 4 | 3397550 | 3182 | 53 |
17-BR00304 | Genus species | 7 | 3287924 | 3116 | 52 |
17-BR00305 | Genus species | 4 | 3312968 | 3152 | 53 |
17-BR00306 | Genus species | 4 | 3366569 | 3179 | 53 |
17-BR00307 | Genus species | 9 | 3297315 | 3145 | 52 |
17-BR00308 | Genus species | 40 | 3476954 | 3261 | 54 |
17-BR00309 | Genus species | 3 | 3311830 | 3151 | 53 |
17-BR00310 | Genus species | 12 | 3329640 | 3168 | 53 |
17-BR00311 | Genus species | 5 | 3318653 | 3160 | 53 |
17-BR00312 | Genus species | 5 | 3324165 | 3076 | 52 |
17-BR00313 | Genus species | 5 | 3169694 | 3019 | 52 |
17-BR00314 | Genus species | 27 | 3355197 | 3175 | 52 |
17-BR00315 | Genus species | 24 | 3362826 | 3198 | 54 |
17-BR00316 | Genus species | 19 | 3355385 | 3189 | 54 |